All of Chris Miller’s publications on Google Scholar 


Recent Publications

Narrowe, A.B., Borton, M.A., Hoyt, D.W., Smith, G.J., Daly, R.A., Angle, J.C., Eder, E.K., Wong, A.R., Wolfe, R.A., Pappas, A., Bohrer, G., Miller, C.S. & Wrighton, K.C., 2019. Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils W. Orsi, ed. mSystems, 4(6), pp.e00320-19. [link]

Narrowe, A.B., Spang, A., Stairs, C.W., Caceres, E.F., Baker, B.J., Miller, C.S. & Ettema, T.J.G., 2018. Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids P. López-García, ed. Genome Biology and Evolution, 10(9), pp.2380–2393. [link].

Narrowe, A.B., Miller, C.S. & Lozupone, C., 2017. Microbial Biodiversity: Straight from the Dolphin’s Mouth. Current Biology, 27(24), pp.R1307–R1309. [link]

Angle, J.C., Morin, T.H., Solden, L.M., Narrowe, A.B., Smith, G.J., Borton, M.A., Rey-Sanchez, C., Daly, R.A., Mirfenderesgi, G., Hoyt, D.W., Riley, W.J., Miller, C.S., Bohrer, G. & Wrighton, K.C., 2017. Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions. Nature Communications, 8(1), p.1567. [link]

Narrowe, A.B., Angle, J.C., Daly, R.A., Stefanik, K.C., Wrighton, K.C. & Miller, C.S., 2017. High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils. Environmental Microbiology, 19(6), pp.2192–2209. [link]

Mosier, A.C., Miller, C.S., Frischkorn, K.R., Ohm, R.A., Li, Z., LaButti, K., Lapidus, A., Lipzen, A., Chen, C., Johnson, J., Lindquist, E.A., Pan, C., Hettich, R.L., Grigoriev, I. V., Singer, S.W. & Banfield, J.F., 2016. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology, 7(238), p.238. [link]

Andrade, K., Logemann, J., Heidelberg, K.B., Emerson, J.B., Comolli, L.R., Hug, L.A., Probst, A.J., Keillar, A., Thomas, B.C., Miller, C.S., Allen, E.E., Moreau, J.W., Brocks, J.J. & Banfield, J.F., 2015. Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. The ISME Journal, 9(12), pp.2697–2711. [link]

Narrowe, A.B., Albuthi-Lantz, M., Smith, E.P., Bower, K.J., Roane, T.M., Vajda, A.M. & Miller, C.S., 2015. Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure. Microbiome, 3(1), p.6. [link]

Handley, K.M., Wrighton, K.C., Miller, C.S., Wilkins, M.J., Kantor, R.S., Thomas, B.C., Williams, K.H., Gilbert, J.A., Long, P.E. & Banfield, J.F., 2015. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environmental Microbiology. 17, pp. 622–636. [link]

Brooks, B., Firek, B.A., Miller, C.S., Sharon, I., Thomas, B.C., Baker, R., Morowitz, M.J. & Banfield, J.F., 2014. Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants. Microbiome, 2(1), p.1. [link]

Handley, K.M., Verberkmoes, N.C., Steefel, C.I., Williams, K.H., Sharon, I., Miller, C.S., Frischkorn, K.R., Chourey, K., Thomas, B.C., Shah, M.B., Long, P.E., Hettich, R.L. & Banfield, J.F., 2013. Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. The ISME Journal, 7, pp.800–816. [link]

Miller, C.S., Handley, K.M., Wrighton, K.C., Frischkorn, K.R., Thomas, B.C. & Banfield, J.F., 2013. Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments. PloS One, 8(2), p.e56018. [link]

Miller, C.S., 2013. Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE. E. F. DeLong, ed. Methods in Enzymology, 531, pp.333–52. [link]

Wilkins, M.J., Wrighton, K.C., Nicora, C.D., Williams, K.H., McCue, L.A., Handley, K.M., Miller, C.S., Giloteaux, L., Montgomery, A.P., Lovley, D.R., Banfield, J.F., Long, P.E. & Lipton, M.S., 2013. Fluctuations in Species-Level Protein Expression Occur during Element and Nutrient Cycling in the Subsurface. PloS One, 8(3), p.e57819. [link]

Justice, N.B., Pan, C., Mueller, R., Spaulding, S.E., Shah, V., Sun, C.L., Yelton, A.P., Miller, C.S., Thomas, B.C., Shah, M., Verberkmoes, N., Hettich, R. & Banfield, J.F., 2012. Heterotrophic Archaea Contribute to Carbon Cycling in Low-pH, Suboxic Biofilm Communities. Applied and Environmental Microbiology, 78(23), pp.8321–30. [link]

Wrighton, K.C., Thomas, B.C., Sharon, I., Miller, C.S., Castelle, C.J., VerBerkmoes, N.C., Wilkins, M.J., Hettich, R.L., Lipton, M.S., Williams, K.H., Long, P.E. & Banfield, J.F., 2012. Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science, 337(6102), pp.1661–5. [link]

Fujishima, K., Sugahara, J., Miller, C.S., Baker, B.J., Di Giulio, M., Takesue, K., Sato, A., Tomita, M., Banfield, J.F. & Kanai, A., 2011. A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity. Nucleic Acids Research, 39(22), pp.9695–704. [link]

Gladden, J.M., Allgaier, M., Miller, C.S., Hazen, T.C., VanderGheynst, J.S., Hugenholtz, P., Simmons, B.A. & Singer, S.W., 2011. Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass. Applied and Environmental Microbiology, 77(16), pp.5804–12. [link]

Miller, C.S., Baker, B.J., Thomas, B.C., Singer, S.W. & Banfield, J.F., 2011. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biology, 12(5), p.R44. [link]